Structures

PDB	Components	Method	Source	Download
	Structure of YaeJ bound to the Thermus thermophilus 70S ribosome.	X-Ray	Gagnon MG, Seetharaman SV, Bulkley D, Steitz TA. Structural basis for the rescue of stalled ribosomes: structure of YaeJ bound to the ribosome. Science 335 pp. 1370 (2012)	4DH9.pdb 4DHA.pdb 4DHB.pdb 4DHC.pdb
	Complex of SmpB, a tmRNA fragment and EF-Tu-GDP-Kirromycin with the Thermus thermophilus 70S ribosome.	X-Ray	Neubauer C, Gillet R, Kelley AC, Ramakrishnan V. Decoding in the absence of a codon by tmRNA and SmpB in the ribosome. Science 335 pp. 1366 (2012)	4ABR.pdb 4ABS.pdb
	E. coli modified tmRNA bound to 70S ribosome.	Cryo-EM	Fu J, Hashem Y, Wower I, Lei J, Liao HY, Zwieb C, Wower J, Frank J. Visualizing the transfer-messenger RNA as the ribosome resumes translation. EMBO J 29 pp. 3819 (2010)	3IZ4.pdb
	Cryo-EM of Thermus thermophilus ribosome-bound SmpB, with and without ribosomal protein S1.	Cryo-EM	Gillet R, Kaur S, Li W, Hallier M, Felden B, Frank J. Scaffolding as an organizing principle in trans-translation. The roles of small protein B and ribosomal protein S1. J Biol Chem. 282 pp. 6356 (2007)	2OB7.pdb
	Crystal structure of the tRNA-like domain of tmRNA from Thermus thermophilus HB8 bound to SmpB	X-Ray	Bessho Y, Shibata R, Sekine S, Murayama K, Higashijima K, Hori-Takemoto C, Shirouzu M, Kuramitsu S, Yokoyama S. Structural basis for functional mimicry of long-variable-arm tRNA by transfer-messenger RNA. Proc Natl Acad Sci U S A. 104 pp. 8293 (2007)	2CZJ.pdb
	Catalytic fragment of Alanyl-tRNA Synthetase In Complex with L-Serine	X-Ray	Swairjo, M. A., Schimmel, P. R. Breaking Sieve for Steric Exclusion of a Noncognate Amino Acid from Active Site of a tRNA Synthetase. Proc.Natl.Acad.Sci.USA 102 pp. 988 (2005)	1YGB.pdb
	tmRNA, SmpB, EF-Tu and h44 fitted into the 70S ribosome of T. thermophilus	Cryo-EM	Valle, M., Gillet, R., Kaur, S., Henne, A., Ramakrishnan, V., Frank, J. Visualizing Tmrna Entry Into a Stalled Ribosome Science 300 pp. 127 (2003)	1ZC8.pdb
	SmpB of Aquifex aeolicus with TLD of tmRNA	X-Ray	Gutmann, S., Haebel, P. W., Metzinger, L., Sutter, M., Felden, B., Ban, N. Crystal Structure of the Transfer-RNA Domain of Transfer-Messenger RNA in Complex with Smpb Nature 424 pp. 699 (2003)	1P6V.pdb
	SmpB of Thermus thermophilus	NMR	Someya, T., Nameki, N., Hosoi, H., Suzuki, S., Hatanaka, H., Fujii, M., Terada, T., Shirouzu, M., Inoue, Y., Shibata, T., Kuramitsu, S., Yokoyama, S., Kawai, G. Solution Structure of a Tmrna-Binding Protein, Smpb, from T. thermophilus FEBS Lett. 535 pp. 94 (2003)	1J1H.pdb
	SmpB of Aquifex aeolicus	NMR	Dong, G., Nowakowski, J., Hoffman, D. W.: Structure of Small Protein B The Protein Component of the Tmrna-Smpb System for Ribosome Rescue Embo J. 21 pp. 1845 (2002)	1K8H.pdb
	Thermus thermophilus Ef-Tu in Complex with the GTP Analogue Gppnhp	X-Ray	Hilgenfeld, R., Mesters, J. R., Hogg, T.: Insights Into the GTPase Mechanism of EF-TU from Structural Studies The Ribosome: Structure, Function, Antibiotics, and Cellular Interactions 28 pp. 347 (2000)	1EXM.pdb
	Ternary Complex of E. coli Cysteinyl-tRNA, Thermus aquaticus EF-Tu, and GTP	X-Ray	Nissen, P., Thirup, S., Kjeldgaard, M., Nyborg, J. The crystal structure of Cys-tRNACys-EF-Tu-GDPNP reveals general and specific features in the ternary complex and in tRNA Structure Fold Des 7 pp. 143 (1999)	1B23.pdb
	Protein S1 RNA-binding domain of E. coli	NMR	Bycroft, M., Hubbard, T. J., Proctor, M., Freund, S. M., Murzin, A. G. The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold Cell 88 pp. 235 (1997)	1SRO.pdb
	Ternary Complex of yeast Phe-tRNA, Thermus aquaticus EF-Tu, and GDPNP	X-Ray	Halic, M. Becker, T. Pool, M.R. Spahn, C.M. Grassucci, R.A. Frank, J. Beckmann, R. Nissen, P., Kjeldgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B. F., Nyborg, J. Crystal structure of the ternary complex of Phe-tRNAPhe, EF-Tu, and a GTP analog Science 270 pp. 1464 (1995)	1TTT.pdb